Bioethics

On Jan 28, Pope Francis met with a group from Italy concerned with bioethics. He calls for the respect for human dignity from conception to natural death. In US bioethics, the “bio” part is clear but the “ethics” not so much.

The National Institutes of Health (NIH) has a webpage for their Department of Bioethics (link HERE). However, it also has webpages about its Human Stem Cell Research (first link HERE). Dr. Francis Collins, director of NIH, has promoted human embryonic research. He has made presentations to members of congress (link HERE). Previous protections for embryos were reversed by Barack Obama in 2009, affecting funding for NIH research (link HERE).

Dr. Collins also founded Biologos (link HERE). This organization announces itself on its website by saying, “Biologos Invites the Church and the world to see the harmony between science and biblical faith as we present an evolutionary understanding of God’s creation.” Now, this statement could have quit right after “biblical faith,” or have said that the understanding comes through physics or through biology, but how does it continue? The group presents an evolutionary understanding of God’s creation.

Is there a link between believing in random evolution and accepting research on human embryonic stem cells and fetuses? I believe I see this connection. Perhaps complete randomness implies a slight lowering of human value, enough of a lowering that humans in the womb are expendable. If you do not agree, let me know. But please think it over first.

Orphan Genes

Scientists started comparing whole genome sequences of various species in the 1990’s. Genes that are only found in one or very closely related species are called unique, de novo, ORFan or orphan genes. The amazing thing is that the more they compare species, the more unique genes they find. These genes make up about 10-20% of each organism’s whole set, percentages given by Dr. Ann Gauger, "Orphan Genes: A Guide for the Perplexed," Evolution News, July 30, 2013. I have seen research even in the 30% range. These unique genes are so different from each other that the chance they could have come from an evolutionary sequence is vanishingly small. This is, for one reason, because there could have been no more than 10^50 organisms on Earth so far even if the Earth is very old. The unique genes are statistically so far apart that even this many organisms are not enough to sort through the various possibilities.  (And only one in about 10^70 proteins is functional. So the sorting of proteins for functional ones makes evolution by chance look pretty much impossible.) In contrast, if all genes (and corresponding proteins) were closely related and in obvious sequence in species, Darwin would have been proven right.

Eugene Koonin is Senior Investigator of comparative genomics at National Center for Biotechnology Information (NCBI, a division of NIH) and has written many articles. So he is on the front lines of comparative genomics. He and Yuri Wolf wrote an article in 2008: Koonin and Wolf,  "Genomics of bacteria and archaea: emerging dynamic view of the prokaryotic world," Nucleic Acids Research 36, 21 (Dec. 1 2008): 6688-6719. They found there were some proteins common to many species of bacteria and archaea (one-celled organisms different from bacteria). But what surprised them was the vast amount of variety between species and the unique genes. Koonin has become part of a movement to find other explanations for evolution instead of neo-Darwinism called the Third Way of Evolution. The "evolution" part is because Koonin is committed to evolution although his move shows that he believes neo-Darwinian evolution is falsified. But these findings of comparative genomics also support direct creation of species.

Another article by J. Muller, et al., "eggNOG v2.0," Nucleic Acids Research, Database Issue 38 (Jan. 2010): D190-D195, compares various species. In the diagram there are species names in the middle with radiating lines that go out to colors of the graph. The green and orange represent genes which are related, but the outer gray areas are orphan genes which do not match other species (much easier to see in the full article at the title link).

A more recent article by Jorge Ruiz-Orera, et al., "Origins of de novo genes in human and chimpanzee," PLOS Genetics, Dec. 1, 2015, has reinforced these findings. The researcher and his group were looking for unique human and chimpanzee genes and found them. Their author summary starts:

For the past 20 years scientists have puzzled over a strange-yet-ubiquitous genomic phenomenon; in every genome there are sets of genes which are unique to that particular species i.e. lacking homologues in any other species.

Homologues are related genes. As stated above, these unique genes cannot be explained by the supposed machines of evolution: mutation and selection. The complete published paper can be found at the title link.

On a related subject, a problem in the past was that in comparing genes, scientists used genes they already had to see if they were in the other organisms. This left sequences that did not match out of the loop of potential genes. However, they have begun to use other criteria, such as start and stop sequences, to now identify more non-matching areas that look like genes. This is promising to show even more unique genes.

Conscience and Religion

We cannot read the minds of people of other religions. When addressing one or another, we might wonder what their consciences are telling them about their sins. This understanding that everyone sins is crucial to Christianity. Jesus Christ, Son of God, came to us to atone for our sins. He lived without sin and died in our place so we humans would be acceptable to God and therefore able to live in heaven with Him (God being in the form of Father, Son and Holy Spirit). Jesus told us that if a person believes in Him, s/he will be saved. He didn’t say it doesn’t matter what you believe.

Yet we have people around us who do not believe in any religion or believe in a different religion and seem to not be bothered by their conscience. Others believe they might have done evil but think their own religion answers to it, such as Karma in Buddhism. And there are others who do believe in Christ that don’t seem to feel urgency to spread the word about Christ.

Christians believe it is the Holy Spirit who convicts people of sin. Jesus says:

7 But I tell you the truth, it is better for you that I go. For if I do not go, the Advocate [Holy Spirit] will not come to you. But if I go, I will send him to you. 8 And when he comes he will convict the world in regard to sin and righteousness and condemnation…
(John 16:7-8 NABRE)

I think that most people have a conscience whispering somewhere in their brains. The Catholic Church respects the free conscience of persons, which can be seen here:

1782 Man has the right to act in conscience and in freedom so as personally to make moral decisions. "He must not be forced to act contrary to his conscience. Nor must he be prevented from acting according to his conscience, especially in religious matters," Catechism of the Catholic Church Part III, Sec. 1, Ch. 1, Art. 6.

I do think humans are made for the Truth, although sin and fallen nature get in the way. In this Truth is the desire to do good. Certainly when a person does wrong, a healthy conscience makes him/her uncomfortable. But what about faith? In the same Article listed above:

1787 Man is sometimes confronted by situations that make moral judgments less assured and decision difficult. But he must always seriously seek what is right and good and discern the will of God expressed in divine law.
1788 To this purpose, man strives to interpret the data of experience and the signs of the times assisted by the virtue of prudence, by the advice of competent people, and by the help of the Holy Spirit and his gifts.

(More on conscience is found in the Vatican II Declaration on Religious Freedom (Dec. 7, 1965).

As it says there we should seek the Holy Spirit and His gifts--right judgment, understanding, knowledge, courage, wisdom, reverence and awe and wonder in His presence. Even for those who are not familiar with Christianity, they can seek Him by praying that He come to them. The Holy Spirit then draws them to the true God. For them, it can be the start of an overwhelmingly lovely relationship.

Catholic Answers Forums

I have been posting on Catholic Answers Forums (CAF) a little bit and I thought I’d put some of the issues I follow there on my blog here. CAF is a Catholic chat website.

We’ve been having an interesting time talking with people from various faiths. Buddhists and Hindus among others have had input on our board. I’ve been in a discussion that’s been going on for a while that is called “3000 gods but only yours exists.” Apparently someone had an atheist friend say that to them in a sarcastic way and the person asked for ideas of what to answer back. The thread is still going after 16 pages of 15 comments each but the original poster is probably long gone by now.

One issue brought up was whether you have to be a Christian to go to heaven (at least our idea of it). This is a contentious issue even among Christians. The Vatican II document Lumen Gentium addresses this. However, this document was a source of confusion and even today we have liberals and conservatives arguing over it. It mentions Jews and Muslims as being related to the people of God. And yet it warns us that in the end:

But often men, deceived by the Evil One, have become vain in their reasonings and have exchanged the truth of God for a lie, serving the creature rather than the Creator. Or some there are who, living and dying in this world without God, are exposed to final despair. Wherefore to promote the glory of God and procure the salvation of all of these, and mindful of the command of the Lord, "Preach the Gospel to every creature", the Church fosters the missions with care and attention (Sec. 16).

Concerning the confusion, in 1999 Josef Ratzinger, who became Pope Benedict XVI, wrote a Declaration called Dominus Iesus. He states:

As a remedy for this relativistic mentality, which is becoming ever more common, it is necessary above all to reassert the definitive and complete character of the revelation of Jesus Christ. In fact, it must be firmly believed that, in the mystery of Jesus Christ, the Incarnate Son of God, who is “the way, the truth, and the life” (Jn 14:6), the full revelation of divine truth is given: “No one knows the Son except the Father, and no one knows the Father except the Son and anyone to whom the Son wishes to reveal him” (Mt 11:27); “No one has ever seen God; God the only Son, who is in the bosom of the Father, has revealed him” (Jn 1:18); “For in Christ the whole fullness of divinity dwells in bodily form” (Col 2:9-10) (Sec. 5).

It is our obligation as Christians to proceed under the understanding that Christ is absolutely necessary for our entrance into heaven. How He will judge others of different faiths is His business. Our job is to witness to Christ in every way possible, including the effects of His presence, along with the Father and Holy Spirit, in our lives.

One Post at a Time

It’s been quite some time since I’ve added a post to my blog. I seemed at a crossroad when I finished my book, Biotech Swirl, and didn’t know if I wanted to keep writing the blog.  Though it might not seem like a monumental decision, (I've been through this a lot), I felt I’ve had to pray about it. My husband’s health is not that good and I might have to drop the blog again if I get too busy in care-giving.

I'm not sure I’ve had any profound insights from my prayers except that I realized I am living one day at a time, so perhaps I should just approach my blog one post at a time. I kept updating the last post so I might as well write new ones. I had been doing regular monthly posts for a while but now I will just write when I feel moved to do so and see how it goes. If you are reading this, thanks for your patience while I get myself together.

I'm still going to Catholic Answers Forums (CAF) and sometimes post there. They have a lot of good discussions there and I think the website is very well done. In fact, it was in reading the discussions there that my fingers started to itch to write again.

Praise the Lord

Welcome to my blog. I had written this on May 11, the date of the post: 

I think these blogs by my husband and I have run their course. We will not be making more posts but will have them available. My husband had quit posting in his blog a while ago due to bad health and is not taking comments. Thanks to all of you who have visited. I thank the Lord for the opportunity to have written mine and I praise Him for His love and creative power.

However, I updated on 6/15/2015 with this: 

I am re-thinking about closing my blog, womanatwell, but do not plan to post until at least the end of summer. However, my husband's blog, Muskegonmemories, will now be closed to posts and comments.

Thanks for your patience. I've been with this blog since 2008 and would miss it, but life has a way of getting ahead of us sometimes.  If you have read along, you know I have had the periodic theme of whether to continue the blog or not. Maybe I'll catch up by autumn. In the meantime, please help yourself to free e-books and the posts I've already done. Thanks much.

Also to note: The comments are open but moderated in this blog. Just go to any regular post to leave a comment.

9/3/15:
I thought it would be good to update my blog since I haven't had a post since one dated May 11. At that time I said I was planning to discontinue posting but to keep the blog online. The blog is still a source for  my books and a variety of subjects (see right column), including the amazing complexity of Creation. I thought I might resume in autumn, but for various reasons I don't plan to post on a regular basis any time soon.

What I have been able to do is to periodically check in on the Catholic Answers Forums (CAF) and see what is being written there. I have even made a few comments when I have had the time under the name, womanatwell. The setup there is very well done, I think, and the people who comment cover a wide array of topics. My participation allows me to communicate with others and I use my blog as a reference link in some cases. I hope you will check it out at the link I have above on the Forums name.

I thank anyone reading this for visiting and may God bless you.

The Pure Life

In our culture the controversies over how to live are especially loud right now. Many people wonder why Christians are so “judgmental.” We advocate for a pure, holy life. People may ask who decides what a “pure life” is and whether it even exists. Why should we care how others live? Doesn’t God just want people to be happy and love one another?

If you have any kind of a conscience, you will know you can’t have your own way all the time. To please and help others, you have to make sacrifices. Unfortunately, most people are innately selfish. The concept of “fallen nature,” which is associated with sin, is part of the Christian doctrine.

Throughout the Bible there are concepts of laws, order and the ideal existence. The Old Testament tells us of the Jewish clan who believed God Himself gave them rules to live by. They were not to murder, to commit adultery or even be jealous of others. They therefore had concepts of the good separate from the bad in terms of behavior.

To justify bad behavior, a person can deny there is anything such as bad behavior. One common argument is that all things are relative--what’s good for you might be bad for me. Well, certainly if you take things from me, someone might consider that argument proven. But in terms of a standard of behavior, most of us have one even if we deny it. It’s pretty general that no one wants things stolen from them, so therefore stealing is bad. In general, no one wants to endure the betrayal of adultery by the person they love or have their parent abandon them.

Over the years we have come to have laws that follow lines of what our citizens believe are right and wrong. However, there are great pressures against these laws in terms of Christian standards of pure living. Part of Christian evangelism is to convince people that purity is what God wants.

A pure life harmonizes with emotional joy and stability. That doesn’t mean it is easy, but the outcome is wonderful. The fallen nature is a source of aberrant desires which can be acted out (greed, selfishness, aggression, etc.), pulling us away from joy and deep happiness. The superficial satisfaction of pursuing wrong desires leads to bad places, but that is very hard to believe for those who are not experienced in the end points. It is much easier to accept the Hollywood versions of persons who can’t help how they behave and are being discriminated against.

But many Christians have experienced results of bad choices and then real change in our lives. We talk about being freed from the chains of addictions. For some it happens immediately, but for others a slow improvement over time. I know there are complications because some people say they pray for help but still can’t seem to change. I don’t have all the answers, but Jesus Christ tells of the woman who keeps asking a judge for a favorable decision until he finally gives it to her (Luke 18:1-8 NABRE). Christ tells us to not become weary about praying.

Our feelings and desires can change when we encounter the Lord’s interventions because the “tearing down” of the bad is replaced with the “building up” of the good. The degradation of impurity is a reason many look for relief in drugs, alcohol or other addictions. But those things never reach the deepest places which crave fulfillment. Only walking in God’s ways, which encompasses belief in Him and living the pure life, can fill that hole. Then we realize the pure life is really the best one after all.